To orchestrate tools and help users with their analyses, several workflows populate ASaiM framework. They formally orchestrate tools in a defined order and with defined parameters, but they are customizable (tools, order, parameters).

The main workflow processes from raw sequences to produces accurate and precise taxonomic assignations, multi-level functional results and taxonomically-related metabolism information, in few hours on a commodity computer.

Other workflows are also proposed for comparative analyses.

Workflows are not automatically added to the Galaxy instance. Check out how to add them.